Sharing Jupyter notebooks within a team












23












$begingroup$


I would like to set up a server which could support a data science team in the following way: be a central point for storing, versioning, sharing and possible also executing Jupyter notebooks.



Some desired properties:




  1. Different users can access the server and open and execute notebooks that were stored by them or by other team members. The interesting question here is what would be the behavior if user X executes cells in a notebook authored by user Y. I guess the notebook should NOT be changed:

  2. Solution should be self-hosted.

  3. Notebooks should be stored either on the server or on Google drive or on self-hosted instance of owncloud.

  4. (Bonus) Notebooks will be under git versioning control (git may be self-hosted. Cannot be bounded to GitHub or something of that sort).


I looked into JupyterHub and Binder. With the former, I didn't understand how to allow cross users access. The latter seems to only support GitHub as the storage of the notebooks.



Do you have experience with either of the solutions?










share|improve this question











$endgroup$












  • $begingroup$
    Kaggle announced a system that might be what you want.
    $endgroup$
    – Ricardo Cruz
    Nov 11 '16 at 15:07






  • 1




    $begingroup$
    JupiterHub is exactly for this propose.
    $endgroup$
    – dannyeuu
    Nov 15 '16 at 14:24










  • $begingroup$
    @dannyeuu I assume you meant JupyterHub, right? Is it possible to have cross users notebooks sharing?
    $endgroup$
    – Dror Atariah
    Nov 16 '16 at 7:08










  • $begingroup$
    No, each user has a separate instance of Jupyter spawned. AFAIK you can't easily share notebooks.
    $endgroup$
    – Lukasz Tracewski
    Dec 2 '16 at 20:06










  • $begingroup$
    Google Colaboratory definitely meets requirement 3.
    $endgroup$
    – Leponzo
    yesterday
















23












$begingroup$


I would like to set up a server which could support a data science team in the following way: be a central point for storing, versioning, sharing and possible also executing Jupyter notebooks.



Some desired properties:




  1. Different users can access the server and open and execute notebooks that were stored by them or by other team members. The interesting question here is what would be the behavior if user X executes cells in a notebook authored by user Y. I guess the notebook should NOT be changed:

  2. Solution should be self-hosted.

  3. Notebooks should be stored either on the server or on Google drive or on self-hosted instance of owncloud.

  4. (Bonus) Notebooks will be under git versioning control (git may be self-hosted. Cannot be bounded to GitHub or something of that sort).


I looked into JupyterHub and Binder. With the former, I didn't understand how to allow cross users access. The latter seems to only support GitHub as the storage of the notebooks.



Do you have experience with either of the solutions?










share|improve this question











$endgroup$












  • $begingroup$
    Kaggle announced a system that might be what you want.
    $endgroup$
    – Ricardo Cruz
    Nov 11 '16 at 15:07






  • 1




    $begingroup$
    JupiterHub is exactly for this propose.
    $endgroup$
    – dannyeuu
    Nov 15 '16 at 14:24










  • $begingroup$
    @dannyeuu I assume you meant JupyterHub, right? Is it possible to have cross users notebooks sharing?
    $endgroup$
    – Dror Atariah
    Nov 16 '16 at 7:08










  • $begingroup$
    No, each user has a separate instance of Jupyter spawned. AFAIK you can't easily share notebooks.
    $endgroup$
    – Lukasz Tracewski
    Dec 2 '16 at 20:06










  • $begingroup$
    Google Colaboratory definitely meets requirement 3.
    $endgroup$
    – Leponzo
    yesterday














23












23








23


9



$begingroup$


I would like to set up a server which could support a data science team in the following way: be a central point for storing, versioning, sharing and possible also executing Jupyter notebooks.



Some desired properties:




  1. Different users can access the server and open and execute notebooks that were stored by them or by other team members. The interesting question here is what would be the behavior if user X executes cells in a notebook authored by user Y. I guess the notebook should NOT be changed:

  2. Solution should be self-hosted.

  3. Notebooks should be stored either on the server or on Google drive or on self-hosted instance of owncloud.

  4. (Bonus) Notebooks will be under git versioning control (git may be self-hosted. Cannot be bounded to GitHub or something of that sort).


I looked into JupyterHub and Binder. With the former, I didn't understand how to allow cross users access. The latter seems to only support GitHub as the storage of the notebooks.



Do you have experience with either of the solutions?










share|improve this question











$endgroup$




I would like to set up a server which could support a data science team in the following way: be a central point for storing, versioning, sharing and possible also executing Jupyter notebooks.



Some desired properties:




  1. Different users can access the server and open and execute notebooks that were stored by them or by other team members. The interesting question here is what would be the behavior if user X executes cells in a notebook authored by user Y. I guess the notebook should NOT be changed:

  2. Solution should be self-hosted.

  3. Notebooks should be stored either on the server or on Google drive or on self-hosted instance of owncloud.

  4. (Bonus) Notebooks will be under git versioning control (git may be self-hosted. Cannot be bounded to GitHub or something of that sort).


I looked into JupyterHub and Binder. With the former, I didn't understand how to allow cross users access. The latter seems to only support GitHub as the storage of the notebooks.



Do you have experience with either of the solutions?







software-recommendation






share|improve this question















share|improve this question













share|improve this question




share|improve this question








edited Dec 5 '16 at 6:28









Society of Data Scientists

534515




534515










asked Nov 8 '16 at 11:00









Dror AtariahDror Atariah

22839




22839












  • $begingroup$
    Kaggle announced a system that might be what you want.
    $endgroup$
    – Ricardo Cruz
    Nov 11 '16 at 15:07






  • 1




    $begingroup$
    JupiterHub is exactly for this propose.
    $endgroup$
    – dannyeuu
    Nov 15 '16 at 14:24










  • $begingroup$
    @dannyeuu I assume you meant JupyterHub, right? Is it possible to have cross users notebooks sharing?
    $endgroup$
    – Dror Atariah
    Nov 16 '16 at 7:08










  • $begingroup$
    No, each user has a separate instance of Jupyter spawned. AFAIK you can't easily share notebooks.
    $endgroup$
    – Lukasz Tracewski
    Dec 2 '16 at 20:06










  • $begingroup$
    Google Colaboratory definitely meets requirement 3.
    $endgroup$
    – Leponzo
    yesterday


















  • $begingroup$
    Kaggle announced a system that might be what you want.
    $endgroup$
    – Ricardo Cruz
    Nov 11 '16 at 15:07






  • 1




    $begingroup$
    JupiterHub is exactly for this propose.
    $endgroup$
    – dannyeuu
    Nov 15 '16 at 14:24










  • $begingroup$
    @dannyeuu I assume you meant JupyterHub, right? Is it possible to have cross users notebooks sharing?
    $endgroup$
    – Dror Atariah
    Nov 16 '16 at 7:08










  • $begingroup$
    No, each user has a separate instance of Jupyter spawned. AFAIK you can't easily share notebooks.
    $endgroup$
    – Lukasz Tracewski
    Dec 2 '16 at 20:06










  • $begingroup$
    Google Colaboratory definitely meets requirement 3.
    $endgroup$
    – Leponzo
    yesterday
















$begingroup$
Kaggle announced a system that might be what you want.
$endgroup$
– Ricardo Cruz
Nov 11 '16 at 15:07




$begingroup$
Kaggle announced a system that might be what you want.
$endgroup$
– Ricardo Cruz
Nov 11 '16 at 15:07




1




1




$begingroup$
JupiterHub is exactly for this propose.
$endgroup$
– dannyeuu
Nov 15 '16 at 14:24




$begingroup$
JupiterHub is exactly for this propose.
$endgroup$
– dannyeuu
Nov 15 '16 at 14:24












$begingroup$
@dannyeuu I assume you meant JupyterHub, right? Is it possible to have cross users notebooks sharing?
$endgroup$
– Dror Atariah
Nov 16 '16 at 7:08




$begingroup$
@dannyeuu I assume you meant JupyterHub, right? Is it possible to have cross users notebooks sharing?
$endgroup$
– Dror Atariah
Nov 16 '16 at 7:08












$begingroup$
No, each user has a separate instance of Jupyter spawned. AFAIK you can't easily share notebooks.
$endgroup$
– Lukasz Tracewski
Dec 2 '16 at 20:06




$begingroup$
No, each user has a separate instance of Jupyter spawned. AFAIK you can't easily share notebooks.
$endgroup$
– Lukasz Tracewski
Dec 2 '16 at 20:06












$begingroup$
Google Colaboratory definitely meets requirement 3.
$endgroup$
– Leponzo
yesterday




$begingroup$
Google Colaboratory definitely meets requirement 3.
$endgroup$
– Leponzo
yesterday










6 Answers
6






active

oldest

votes


















2












$begingroup$

Airbnb recently open sourced their internal data science knowledge repository: https://github.com/airbnb/knowledge-repo



From its readme, it seems it could loosely fit your use case:




The Knowledge Repository project is focused on facilitating the
sharing of knowledge between data scientists and other technical roles
using data formats and tools that make sense in these professions. It
provides various data stores (and utilities to manage them) for
"knowledge posts", with a particular focus on notebooks (R Markdown
and Jupyter / iPython Notebook) to better promote reproducible
research.




There's also a blog post commenting on its motivation.






share|improve this answer









$endgroup$





















    2












    $begingroup$

    JupyterHub does not provide version control system nor facilitates sharing of Notebooks. You mentioned yourself limitation of Binder.



    Try Zeppelin. Version 0.7 should be released within a few next days.




    • As you can see from the roadmap, this version delivers "enterprise" features which are exactly about collaboration.

    • Version control system (git) is integrated.

    • It's self-hosted.


    In essence, I think it meets all requirements you posted. On top of that it delivers richer visualisation capabilities and plethora of other features (works with Shiro, Knox, Kerberos - secure Spark anyone?).






    share|improve this answer









    $endgroup$





















      0












      $begingroup$

      The only self-hosted solution I know is the paid Anaconda Enterprise cloud setup, https://anaconda.org/about. The other solutions I am aware of are not self-hostable!






      share|improve this answer









      $endgroup$





















        0












        $begingroup$

        Isn't this solution good enough ?



        You can protect the access with ssh, and the hosted files could be the git repository you want, with different linux (or whatever) user access. You'll need your own server.






        share|improve this answer









        $endgroup$





















          0












          $begingroup$

          What I found - sharing notebooks for data scientists is a not a desirable format for communication. Many of them prefer IDE like Spider/RStudio or just a text editors (I know a few data scientists who use vi).



          You might just share code by your source control and data by cloud storages. It will increase flexibility.



          I've recently open sourced a tool which combines code, data, and the dependencies between data and code to a single environment and makes your data science project reproducible: DVC or dataversioncontrol.com (there is a tutorial).



          With DVC tool you can just share your project by Git, sync data to S3 by a single DVC command. If some of your data scientists decide to change the code at any stage of your project then the final result could be easily reproduced by a single command dvc repro data/target_metrics.txt.






          share|improve this answer









          $endgroup$





















            0












            $begingroup$

            Domino Data Lab offers premises, SaaS, and VPC-based notebook hosting (Jupyter, Zeppelin, RStudio), git integration, scalable compute, environment templates, and a bunch of other useful things. The premises/ VPC offerings may be overkill and too pricey if you're a small team, but the SaaS plans are pretty reasonably priced.



            [ Full disclosure: I'm a former Domino employee ]






            share|improve this answer









            $endgroup$














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              6 Answers
              6






              active

              oldest

              votes








              6 Answers
              6






              active

              oldest

              votes









              active

              oldest

              votes






              active

              oldest

              votes









              2












              $begingroup$

              Airbnb recently open sourced their internal data science knowledge repository: https://github.com/airbnb/knowledge-repo



              From its readme, it seems it could loosely fit your use case:




              The Knowledge Repository project is focused on facilitating the
              sharing of knowledge between data scientists and other technical roles
              using data formats and tools that make sense in these professions. It
              provides various data stores (and utilities to manage them) for
              "knowledge posts", with a particular focus on notebooks (R Markdown
              and Jupyter / iPython Notebook) to better promote reproducible
              research.




              There's also a blog post commenting on its motivation.






              share|improve this answer









              $endgroup$


















                2












                $begingroup$

                Airbnb recently open sourced their internal data science knowledge repository: https://github.com/airbnb/knowledge-repo



                From its readme, it seems it could loosely fit your use case:




                The Knowledge Repository project is focused on facilitating the
                sharing of knowledge between data scientists and other technical roles
                using data formats and tools that make sense in these professions. It
                provides various data stores (and utilities to manage them) for
                "knowledge posts", with a particular focus on notebooks (R Markdown
                and Jupyter / iPython Notebook) to better promote reproducible
                research.




                There's also a blog post commenting on its motivation.






                share|improve this answer









                $endgroup$
















                  2












                  2








                  2





                  $begingroup$

                  Airbnb recently open sourced their internal data science knowledge repository: https://github.com/airbnb/knowledge-repo



                  From its readme, it seems it could loosely fit your use case:




                  The Knowledge Repository project is focused on facilitating the
                  sharing of knowledge between data scientists and other technical roles
                  using data formats and tools that make sense in these professions. It
                  provides various data stores (and utilities to manage them) for
                  "knowledge posts", with a particular focus on notebooks (R Markdown
                  and Jupyter / iPython Notebook) to better promote reproducible
                  research.




                  There's also a blog post commenting on its motivation.






                  share|improve this answer









                  $endgroup$



                  Airbnb recently open sourced their internal data science knowledge repository: https://github.com/airbnb/knowledge-repo



                  From its readme, it seems it could loosely fit your use case:




                  The Knowledge Repository project is focused on facilitating the
                  sharing of knowledge between data scientists and other technical roles
                  using data formats and tools that make sense in these professions. It
                  provides various data stores (and utilities to manage them) for
                  "knowledge posts", with a particular focus on notebooks (R Markdown
                  and Jupyter / iPython Notebook) to better promote reproducible
                  research.




                  There's also a blog post commenting on its motivation.







                  share|improve this answer












                  share|improve this answer



                  share|improve this answer










                  answered Dec 1 '16 at 9:50









                  ncasasncasas

                  3,7631131




                  3,7631131























                      2












                      $begingroup$

                      JupyterHub does not provide version control system nor facilitates sharing of Notebooks. You mentioned yourself limitation of Binder.



                      Try Zeppelin. Version 0.7 should be released within a few next days.




                      • As you can see from the roadmap, this version delivers "enterprise" features which are exactly about collaboration.

                      • Version control system (git) is integrated.

                      • It's self-hosted.


                      In essence, I think it meets all requirements you posted. On top of that it delivers richer visualisation capabilities and plethora of other features (works with Shiro, Knox, Kerberos - secure Spark anyone?).






                      share|improve this answer









                      $endgroup$


















                        2












                        $begingroup$

                        JupyterHub does not provide version control system nor facilitates sharing of Notebooks. You mentioned yourself limitation of Binder.



                        Try Zeppelin. Version 0.7 should be released within a few next days.




                        • As you can see from the roadmap, this version delivers "enterprise" features which are exactly about collaboration.

                        • Version control system (git) is integrated.

                        • It's self-hosted.


                        In essence, I think it meets all requirements you posted. On top of that it delivers richer visualisation capabilities and plethora of other features (works with Shiro, Knox, Kerberos - secure Spark anyone?).






                        share|improve this answer









                        $endgroup$
















                          2












                          2








                          2





                          $begingroup$

                          JupyterHub does not provide version control system nor facilitates sharing of Notebooks. You mentioned yourself limitation of Binder.



                          Try Zeppelin. Version 0.7 should be released within a few next days.




                          • As you can see from the roadmap, this version delivers "enterprise" features which are exactly about collaboration.

                          • Version control system (git) is integrated.

                          • It's self-hosted.


                          In essence, I think it meets all requirements you posted. On top of that it delivers richer visualisation capabilities and plethora of other features (works with Shiro, Knox, Kerberos - secure Spark anyone?).






                          share|improve this answer









                          $endgroup$



                          JupyterHub does not provide version control system nor facilitates sharing of Notebooks. You mentioned yourself limitation of Binder.



                          Try Zeppelin. Version 0.7 should be released within a few next days.




                          • As you can see from the roadmap, this version delivers "enterprise" features which are exactly about collaboration.

                          • Version control system (git) is integrated.

                          • It's self-hosted.


                          In essence, I think it meets all requirements you posted. On top of that it delivers richer visualisation capabilities and plethora of other features (works with Shiro, Knox, Kerberos - secure Spark anyone?).







                          share|improve this answer












                          share|improve this answer



                          share|improve this answer










                          answered Dec 2 '16 at 20:05









                          Lukasz TracewskiLukasz Tracewski

                          1212




                          1212























                              0












                              $begingroup$

                              The only self-hosted solution I know is the paid Anaconda Enterprise cloud setup, https://anaconda.org/about. The other solutions I am aware of are not self-hostable!






                              share|improve this answer









                              $endgroup$


















                                0












                                $begingroup$

                                The only self-hosted solution I know is the paid Anaconda Enterprise cloud setup, https://anaconda.org/about. The other solutions I am aware of are not self-hostable!






                                share|improve this answer









                                $endgroup$
















                                  0












                                  0








                                  0





                                  $begingroup$

                                  The only self-hosted solution I know is the paid Anaconda Enterprise cloud setup, https://anaconda.org/about. The other solutions I am aware of are not self-hostable!






                                  share|improve this answer









                                  $endgroup$



                                  The only self-hosted solution I know is the paid Anaconda Enterprise cloud setup, https://anaconda.org/about. The other solutions I am aware of are not self-hostable!







                                  share|improve this answer












                                  share|improve this answer



                                  share|improve this answer










                                  answered Nov 22 '16 at 17:26









                                  RHCRHC

                                  1413




                                  1413























                                      0












                                      $begingroup$

                                      Isn't this solution good enough ?



                                      You can protect the access with ssh, and the hosted files could be the git repository you want, with different linux (or whatever) user access. You'll need your own server.






                                      share|improve this answer









                                      $endgroup$


















                                        0












                                        $begingroup$

                                        Isn't this solution good enough ?



                                        You can protect the access with ssh, and the hosted files could be the git repository you want, with different linux (or whatever) user access. You'll need your own server.






                                        share|improve this answer









                                        $endgroup$
















                                          0












                                          0








                                          0





                                          $begingroup$

                                          Isn't this solution good enough ?



                                          You can protect the access with ssh, and the hosted files could be the git repository you want, with different linux (or whatever) user access. You'll need your own server.






                                          share|improve this answer









                                          $endgroup$



                                          Isn't this solution good enough ?



                                          You can protect the access with ssh, and the hosted files could be the git repository you want, with different linux (or whatever) user access. You'll need your own server.







                                          share|improve this answer












                                          share|improve this answer



                                          share|improve this answer










                                          answered Feb 3 '17 at 13:58









                                          debzsuddebzsud

                                          997313




                                          997313























                                              0












                                              $begingroup$

                                              What I found - sharing notebooks for data scientists is a not a desirable format for communication. Many of them prefer IDE like Spider/RStudio or just a text editors (I know a few data scientists who use vi).



                                              You might just share code by your source control and data by cloud storages. It will increase flexibility.



                                              I've recently open sourced a tool which combines code, data, and the dependencies between data and code to a single environment and makes your data science project reproducible: DVC or dataversioncontrol.com (there is a tutorial).



                                              With DVC tool you can just share your project by Git, sync data to S3 by a single DVC command. If some of your data scientists decide to change the code at any stage of your project then the final result could be easily reproduced by a single command dvc repro data/target_metrics.txt.






                                              share|improve this answer









                                              $endgroup$


















                                                0












                                                $begingroup$

                                                What I found - sharing notebooks for data scientists is a not a desirable format for communication. Many of them prefer IDE like Spider/RStudio or just a text editors (I know a few data scientists who use vi).



                                                You might just share code by your source control and data by cloud storages. It will increase flexibility.



                                                I've recently open sourced a tool which combines code, data, and the dependencies between data and code to a single environment and makes your data science project reproducible: DVC or dataversioncontrol.com (there is a tutorial).



                                                With DVC tool you can just share your project by Git, sync data to S3 by a single DVC command. If some of your data scientists decide to change the code at any stage of your project then the final result could be easily reproduced by a single command dvc repro data/target_metrics.txt.






                                                share|improve this answer









                                                $endgroup$
















                                                  0












                                                  0








                                                  0





                                                  $begingroup$

                                                  What I found - sharing notebooks for data scientists is a not a desirable format for communication. Many of them prefer IDE like Spider/RStudio or just a text editors (I know a few data scientists who use vi).



                                                  You might just share code by your source control and data by cloud storages. It will increase flexibility.



                                                  I've recently open sourced a tool which combines code, data, and the dependencies between data and code to a single environment and makes your data science project reproducible: DVC or dataversioncontrol.com (there is a tutorial).



                                                  With DVC tool you can just share your project by Git, sync data to S3 by a single DVC command. If some of your data scientists decide to change the code at any stage of your project then the final result could be easily reproduced by a single command dvc repro data/target_metrics.txt.






                                                  share|improve this answer









                                                  $endgroup$



                                                  What I found - sharing notebooks for data scientists is a not a desirable format for communication. Many of them prefer IDE like Spider/RStudio or just a text editors (I know a few data scientists who use vi).



                                                  You might just share code by your source control and data by cloud storages. It will increase flexibility.



                                                  I've recently open sourced a tool which combines code, data, and the dependencies between data and code to a single environment and makes your data science project reproducible: DVC or dataversioncontrol.com (there is a tutorial).



                                                  With DVC tool you can just share your project by Git, sync data to S3 by a single DVC command. If some of your data scientists decide to change the code at any stage of your project then the final result could be easily reproduced by a single command dvc repro data/target_metrics.txt.







                                                  share|improve this answer












                                                  share|improve this answer



                                                  share|improve this answer










                                                  answered May 14 '17 at 0:16









                                                  Dmitry PetrovDmitry Petrov

                                                  20124




                                                  20124























                                                      0












                                                      $begingroup$

                                                      Domino Data Lab offers premises, SaaS, and VPC-based notebook hosting (Jupyter, Zeppelin, RStudio), git integration, scalable compute, environment templates, and a bunch of other useful things. The premises/ VPC offerings may be overkill and too pricey if you're a small team, but the SaaS plans are pretty reasonably priced.



                                                      [ Full disclosure: I'm a former Domino employee ]






                                                      share|improve this answer









                                                      $endgroup$


















                                                        0












                                                        $begingroup$

                                                        Domino Data Lab offers premises, SaaS, and VPC-based notebook hosting (Jupyter, Zeppelin, RStudio), git integration, scalable compute, environment templates, and a bunch of other useful things. The premises/ VPC offerings may be overkill and too pricey if you're a small team, but the SaaS plans are pretty reasonably priced.



                                                        [ Full disclosure: I'm a former Domino employee ]






                                                        share|improve this answer









                                                        $endgroup$
















                                                          0












                                                          0








                                                          0





                                                          $begingroup$

                                                          Domino Data Lab offers premises, SaaS, and VPC-based notebook hosting (Jupyter, Zeppelin, RStudio), git integration, scalable compute, environment templates, and a bunch of other useful things. The premises/ VPC offerings may be overkill and too pricey if you're a small team, but the SaaS plans are pretty reasonably priced.



                                                          [ Full disclosure: I'm a former Domino employee ]






                                                          share|improve this answer









                                                          $endgroup$



                                                          Domino Data Lab offers premises, SaaS, and VPC-based notebook hosting (Jupyter, Zeppelin, RStudio), git integration, scalable compute, environment templates, and a bunch of other useful things. The premises/ VPC offerings may be overkill and too pricey if you're a small team, but the SaaS plans are pretty reasonably priced.



                                                          [ Full disclosure: I'm a former Domino employee ]







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                                                          answered Jun 19 '17 at 17:13









                                                          danielchalefdanielchalef

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